Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs35576914 chr3:53092270 G/A 7.36E-6 174 25.08 30.87 11.78 KM Plot
PCPG rs35583934 chr2:107228174 CTG/C 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs35586119 chr8:121412984 A/T 3.41E-5 170 27.2 25.87 19.3 KM Plot
PCPG rs35589199 chr16:1713861 G/GT 0 178 25.53 18.75 2.93 KM Plot
PCPG rs35609630 chr9:136943128 TA/T 1.85E-5 178 25.53 21.55 28.57 KM Plot
PCPG rs35609720 chr16:88688058 C/G 0.000383 174 25.53 24.35 14.47 KM Plot
PCPG rs35664136 chr14:74414283 T/C 4.63E-6 173 25.17 29.7 10.43 KM Plot
PCPG rs35664804 chr14:74384474 C/T 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs35673500 chr16:1768227 T/C 1.76E-11 174 25.67 18.2 4.52 KM Plot
PCPG rs35702854 chr5:171531574 C/CG 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs35716271 chr10:134396920 T/A 0.000319 171 25.08 27.27 2.23 KM Plot
PCPG rs35717482 chr2:242510982 G/A 8.88E-11 173 25.87 23.43 10.3 KM Plot
PCPG rs35717780 chr2:242586685 CATG/C 7.57E-11 175 25.67 24.7 10.3 KM Plot
PCPG rs35720014 chr3:52982110 A/C 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs35731596 chr2:242590338 A/G 4.53E-11 178 25.87 23.67 10.3 KM Plot